Avid brakes have a history of this howling problem, and it's never been traced to one particular thing causing it but rather, multiple components.
I had a set of Elixir CR's and the rear 185 rotor would howl and resonate through my entire frame and into the handlebars. It was ridiculously annoying. I worked with the shop where I bought the brakes and Avid sent me a new rotor and pads - worked like a charm.
Does this mean a new rotor and pads will fix your issue? Hard to say...check mtbr in the Brakes Forum and you'll see the "Avid Turkey Warble" thread - it has thousands of posts.
Good luck!
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